Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EF-TuEF-Tu; elongation factor Tu. (606 aa)    
Predicted Functional Partners:
guaA
GMP synthase.
  
  
 0.774
EIO_0083
tRNA (guanine-N1-)-methyltransferase.
  
  
 0.686
EIO_1471
Multidrug resistance efflux protein, SMR family protein.
       0.640
rpsI
30S ribosomal protein S9.
  
    0.629
rpmI
50S ribosomal protein L35.
 
    0.608
rplA
50S ribosomal protein L1.
   
  
 0.605
tsf
Translation elongation factor Ts.
  
  
 0.593
EIO_2718
Ribosome maturation factor rimP.
  
  
 0.591
EIO_2430
Glutamine-pyruvate aminotransferase.
  
  
 0.586
rpoC
DNA-directed RNA polymerase, beta' subunit.
  
  
 0.572
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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