Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1491Zinc-containing alcohol dehydrogenase superfamily. (338 aa)    
Predicted Functional Partners:
EIO_1490
AAA ATPase.
       0.592
EIO_1015
tRNA (guanine-N(7)-)-methyltransferase.
     
  0.587
EIO_1492
Secreted protein.
       0.545
EIO_2156
Ser/Thr protein phosphatase/nucleotidase, putative.
   
 
  0.511
guaA
GMP synthase.
    
  0.510
EIO_0481
Conserved hypothetical protein.
   
 
  0.506
EIO_1627
Glycine dehydrogenase.
  
  
 0.438
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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