STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobWCobalamin biosynthesis protein CobW. (301 aa)    
Predicted Functional Partners:
EIO_1521
D-glutamate deacylase.
       0.777
EIO_1520
ABC transporter ATP-binding protein.
       0.773
rpsN
Ribosomal protein S14.
  
 
 0.682
EIO_1518
Binding-protein-dependent transport systems inner membrane component.
       0.620
EIO_1519
Binding-protein-dependent transport systems inner membrane component.
       0.620
EIO_0197
dnaK suppressor protein, putative.
  
  
 0.600
EIO_1523
ABC transporter related protein.
       0.561
rpmB
50S ribosomal protein L28.
  
  
 0.504
EIO_1517
Extracellular solute-binding protein.
     
 0.477
ureG
Urease accessory protein UreG.
      
 0.440
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.