STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1531RNA polymerase sigma factor. (188 aa)    
Predicted Functional Partners:
EIO_1606
Transcriptional activator, putative.
 
 
 0.973
EIO_1532
Conserved hypothetical protein.
 
 
 
 0.963
EIO_1533
beta-Ig-H3/fasciclin.
 
  
 0.826
rpoC
DNA-directed RNA polymerase, beta' subunit.
   
 0.807
rpoB
DNA-directed RNA polymerase, beta subunit.
    
 0.634
rpoD
RNA polymerase sigma factor.
   
 
 0.527
EIO_1608
FAD dependent oxidoreductase.
 
  
 0.511
EIO_1530
Hypothetical protein.
       0.481
rpoH
Alternative sigma factor RpoH.
  
 
 0.470
rpoZ
DNA-directed RNA polymerase omega subunit.
    
 0.442
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.