STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1660Sensory box/GGDEF family protein. (768 aa)    
Predicted Functional Partners:
EIO_0502
Probable ammonium transporter, marine subtype.
 
      0.892
EIO_1789
MCP methyltransferase, CheR-type.
 
 
 0.891
EIO_1033
GGDEF domain protein.
 
0.776
EIO_1528
Diguanylate cyclase.
 
0.722
EIO_0322
Diguanylate cyclase.
 
 
 
0.721
EIO_0561
Diguanylate phosphodiesterase.
 
  
0.703
mcpB
Methyl-accepting chemotaxis protein McpB.
 
 0.602
EIO_1782
Methyl-accepting chemotaxis protein McpC.
 
 0.596
EIO_2771
Sensor protein divL.
  
 
 0.590
EIO_1661
Membrane protein, MarC family.
  
    0.563
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.