Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1676DNA polymerase III subunit chi. (152 aa)    
Predicted Functional Partners:
dnaX
DNA polymerase III, subunits gamma and tau.
    
 0.996
EIO_2448
DNA polymerase III subunit delta.
    
 0.996
EIO_2816
Conserved hypothetical protein.
  
 
 0.996
dnaE
DNA polymerase III subunit alpha.
   
 0.992
EIO_2386
DNA polymerase III, beta subunit.
  
 
 0.985
EIO_2032
DNA polymerase III subunit beta.
    
 0.981
EIO_1766
Exonuclease.
   
 0.968
EIO_2758
DNA polymerase III, epsilon subunit.
   
 0.968
EIO_0448
Error-prone DNA polymerase.
   
 0.930
ssb
Single-strand binding protein.
    
 0.927
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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