STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1698RNA methyltransferase, TrmH family, group 1. (245 aa)    
Predicted Functional Partners:
EIO_1696
Thermostable carboxypeptidase.
       0.830
EIO_1697
Cytochrome oxidase assembly protein.
       0.830
cysS
cysteinyl-tRNA synthetase.
      0.733
EIO_1699
Thiamine-phosphate pyrophosphorylase, putative.
       0.705
EIO_2854
Nicotinamidase.
 
      0.662
EIO_1716
Ribosomal RNA large subunit methyltransferase J.
  
   
 0.567
EIO_1107
Peptidyl-prolyl cis-trans isomerase D, putative.
  
     0.563
rplM
Ribosomal protein L13.
     
 0.522
rpsI
30S ribosomal protein S9.
     
 0.479
EIO_0197
dnaK suppressor protein, putative.
  
     0.468
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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