Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cycHCytochrome c-type biogenesis protein CycH. (394 aa)    
Predicted Functional Partners:
EIO_1708
Putative Holliday junction resolvase.
       0.854
cycL
Cytochrome c biogenesis family protein.
 
  
 0.850
EIO_1376
Probable thiol-disulfide interchange protein.
  
  
 0.762
EIO_2678
HemY domain protein.
  
     0.756
ccmE
Cytochrome c-type biogenesis protein CcmE.
 
  
 0.665
EIO_0567
TPR domain protein.
 
 
  0.662
EIO_0927
Conserved hypothetical protein.
  
    0.592
ccmB
Heme exporter protein CcmB.
 
   
 0.588
EIO_2769
Exonuclease-like protein.
 
     0.588
EIO_1775
Putative membrane protein.
  
     0.583
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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