Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_1709tRNA-dihydrouridine synthase A. (329 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B.
  
  
 0.535
EIO_0234
MiaB-like tRNA modifying enzyme YliG, TIGR01125.
 
  
 0.530
guaA
GMP synthase.
  
  
 0.504
trmE
tRNA modification GTPase.
   
  
 0.451
EIO_1414
Indigoidine synthase A like protein.
     
 0.447
truA
tRNA pseudouridine synthase A.
  
 
 0.438
EIO_0167
Peptide chain release factor 3.
   
  
 0.417
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.413
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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