STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1716Ribosomal RNA large subunit methyltransferase J. (249 aa)    
Predicted Functional Partners:
rpmD
Ribosomal protein L30.
   
  0.977
rplJ
50S ribosomal protein L10.
   
 0.963
rplW
Ribosomal protein L23.
   
  0.961
EIO_1293
NOL1/NOP2/sun family protein.
  
 0.960
EIO_2377
Ribosomal RNA small subunit methyltransferase B, putative.
  
 0.955
EIO_0078
DEAD/DEAH box helicase domain protein.
   
 0.940
rhlE
Putative ATP-dependent RNA helicase RhlE.
   
 0.940
rplV
Ribosomal protein L22.
   
  0.923
rplX
Ribosomal protein L24.
   
   0.882
EIO_2594
50S ribosomal protein L3.
  
 
 0.878
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.