Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
EIO_1733Decarboxylase, pyridoxal-dependent. (395 aa)    
Predicted Functional Partners:
EIO_1395
Hydrolase arginase family.
  
 
 0.929
guaA
GMP synthase.
  
  
 0.580
EIO_1294
Inosine-5'-monophosphate dehydrogenase.
  
 
 0.539
EIO_1732
AgaE.
       0.527
EIO_0647
Riboflavin biosynthesis protein RibD.
     
 0.486
EIO_1022
Lytic murein transglycosylase.
  
     0.448
EIO_1404
Triose-phosphate isomerase.
 
    
 0.445
pntA
NAD(P) transhydrogenase subunit alpha.
     
 0.429
EIO_1202
Aminotransferase, classes I and II superfamily.
 
  
 0.427
pntB
NAD(P)+ transhydrogenase beta chain.
       0.401
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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