Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gatBaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B. (503 aa)    
Predicted Functional Partners:
EIO_1929
Amidase.
 0.999
gatC
glutamyl-tRNA(Gln) amidotransferase subunit C.
 
 0.999
gatA
glutamyl-tRNA amidotransferase subunit A.
 0.999
EIO_1446
Amidase.
 0.998
EIO_2785
Amidase.
 
 0.998
aspS
aspartyl-tRNA synthetase.
 
 
 0.994
EIO_0672
Amidase protein.
 0.986
guaA
GMP synthase.
  
  
 0.915
EIO_1741
Conserved hypothetical protein.
       0.800
pheT
phenylalanyl-tRNA synthetase, beta subunit.
  
  
 0.725
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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