STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpXATP-dependent protease ATP-binding subunit. (422 aa)    
Predicted Functional Partners:
EIO_1756
Protease subunit of ATP-dependent Clp protease.
 0.998
EIO_1229
Phage terminase GpA.
  
 0.990
atpD
ATP synthase F1, beta subunit.
 
   
 0.885
EIO_2765
ATP-dependent HslUV protease.
 
 
 0.878
hslU
Heat shock protein HslVU, ATPase subunit HslU.
 
 
0.857
EIO_1754
NADH-ubiquinone oxidoreductase.
  
    0.804
hfq
RNA chaperone Hfq.
   
  
 0.797
EIO_1753
Conserved hypothetical protein.
       0.784
EIO_1408
ATP-dependent protease La.
 
 
 0.766
EIO_1985
ATPase central domain-containing protein.
  
  
 0.708
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.