STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCSite-specific tyrosine recombinase XerC. (307 aa)    
Predicted Functional Partners:
EIO_1772
Conserved hypothetical protein.
       0.812
EIO_1771
Putative translaldolase.
       0.796
EIO_2788
FtsK/SpoIIIE family protein.
 
   
 0.645
parB
Chromosome partitioning protein parB.
 
  
 0.618
EIO_2143
Holliday junction DNA helicase RuvB.
 
 
 0.610
ruvA
Holliday junction DNA helicase motor protein.
 
  
 0.591
recR
Recombination protein RecR.
  
   
 0.571
parA
Chromosome partitioning protein ParA.
 
   
 0.564
EIO_1770
Hydroxypyruvate isomerase, putative.
       0.543
dnaA
Chromosomal replication initiation protein.
  
   
 0.535
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.