STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1817GntR family transcriptional regulator. (216 aa)    
Predicted Functional Partners:
EIO_1822
GntR family transcriptional regulator.
 
     0.811
EIO_1816
Methylisocitrate lyase.
  
  
 0.776
EIO_1286
Transcriptional regulator, GntR family protein.
  
     0.775
EIO_0641
Transcription regulator family protein.
  
     0.774
EIO_2316
Transcriptional regulator, GntR family.
  
     0.745
EIO_1818
MmgE/PrpD.
       0.653
EIO_0029
Transcriptional regulator, GntR family.
  
     0.648
EIO_1865
Regulatory protein, GntR:Bacterial regulatory protein, GntR.
  
  
 0.614
EIO_0028
Putative regulatory protein, GntR familiy.
  
     0.608
EIO_1815
Transcriptional regulator, GntR family.
 
    
0.598
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.