STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1837Sodium:dicarboxylate symporter. (454 aa)    
Predicted Functional Partners:
sdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein.
   
  
 0.691
EIO_1836
Integral membrane sensor signal transduction histidine kinase.
 
   
 0.677
EIO_1311
Shikimate transporter.
 
   
 0.659
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.623
EIO_1835
Two component, sigma54 specific, Fis family transcriptional regulator.
 
   
 0.587
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
  
 0.531
EIO_2099
Citrate (Si)-synthase.
  
  
 0.441
EIO_1833
Phosphate transporter family protein.
  
  
 0.430
EIO_2204
Bifunctional PutA protein.
   
  
 0.403
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.