STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1923AraC family transcriptional regulator. (292 aa)    
Predicted Functional Partners:
EIO_1922
Twin-arginine translocation pathway signal.
 
     0.813
EIO_2572
DNA-directed RNA polymerase alpha subunit.
   
 
 0.771
EIO_1920
Inner-membrane translocator.
 
     0.670
EIO_1921
Inner-membrane translocator.
 
     0.555
EIO_1919
ABC transporter related protein.
 
     0.536
EIO_1917
Aldehyde dehydrogenase.
 
   
 0.503
EIO_1918
ABC transporter related protein.
 
     0.467
EIO_1055
Transcriptional regulator, XRE family with cupin sensor.
 
 
 0.435
EIO_1088
tRNA delta(2)-isopentenylpyrophosphate transferase.
       0.435
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
Server load: low (22%) [HD]