Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1965Oxidoreductase. (297 aa)    
Predicted Functional Partners:
yxnA
Oxidoreductase yxnA.
 
 
  0.739
EIO_1966
Oxidoreductase yxnA.
 
 
  0.735
EIO_1964
Glycoside hydrolase 15-like protein.
 
     0.692
EIO_0690
Putative arylesterase (aryl-ester hydrolase).
  
 0.483
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
   
 0.476
EIO_1957
Putative dehydrogenase protein.
  
  
  0.472
acpP
Acyl carrier protein.
  
 0.441
EIO_2430
Glutamine-pyruvate aminotransferase.
      
 0.426
EIO_1845
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein.
  
     0.403
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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