Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_1971IclR family transcriptional regulator. (303 aa)    
Predicted Functional Partners:
EIO_2528
Conserved hypothetical protein.
  
    0.893
EIO_2071
Putative transcriptional regulator, IclR family; putative Pca regulon regulatory protein.
  
     0.761
EIO_1970
Major facilitator superfamily MFS_1.
       0.682
EIO_1265
IclR family transcriptional regulator.
  
     0.618
EIO_1885
Conserved hypothetical protein.
  
    0.508
EIO_2072
Putative transcriptional regulator PcaR, IclR family.
  
     0.493
EIO_1972
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
       0.485
EIO_1973
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
       0.476
EIO_1884
Putative allophanate hydrolase subunit 2.
  
    0.472
EIO_1977
5-methylthioadenosine/S-adenosylhomocysteine deaminase.
 
     0.422
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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