Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2005Phage tape measure protein. (1013 aa)    
Predicted Functional Partners:
EIO_1239
Conserved hypothetical protein.
 
   0.888
EIO_2004
Conserved hypothetical protein.
  
  
 0.810
EIO_2006
Hypothetical protein.
       0.773
EIO_0132
Conserved hypothetical protein.
  
  
 0.754
EIO_2007
Hypothetical protein.
       0.671
EIO_2008
Conserved hypothetical protein.
       0.671
EIO_2016
Putative phage terminase large subunit.
 
     0.543
EIO_2015
HK97 family phage portal protein.
 
     0.513
EIO_2012
phiE125 gp8 hypothetical protein.
 
     0.510
EIO_2013
Gp5.
 
    0.509
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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