Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2009Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
EIO_2011
Conserved hypothetical protein.
   
   0.858
EIO_2010
Phage protein, HK97, gp10.
       0.773
EIO_2012
phiE125 gp8 hypothetical protein.
       0.752
EIO_1157
Major tail protein, TP901-1 family.
   
   0.735
EIO_2013
Gp5.
   
   0.724
EIO_2015
HK97 family phage portal protein.
   
   0.688
EIO_2014
Peptidase U35, phage prohead HK97.
  
    0.585
EIO_1155
Head-tail adaptor, putative.
   
   0.523
EIO_2004
Conserved hypothetical protein.
   
   0.508
EIO_2016
Putative phage terminase large subunit.
       0.496
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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