STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2078Xylose repressor. (402 aa)    
Predicted Functional Partners:
EIO_2077
LmbE family protein.
 
     0.922
EIO_2079
ABC transporter, substrate binding protein (sugar).
 
    0.846
EIO_2084
Ribokinase-like domain-containing protein.
 
  
 0.816
asaL
Argininosuccinate lyase 2.
 
     0.798
EIO_2076
S-adenosylmethionine uptake transporter.
 
     0.763
EIO_2080
ABC transporter, membrane spanning protein (sugar).
 
   
 0.717
EIO_0449
LmbE family protein.
 
     0.716
EIO_2081
Binding-protein-dependent transport systems inner membrane component.
 
   
 0.677
EIO_2430
Glutamine-pyruvate aminotransferase.
  
  
 0.452
EIO_2083
ATP-binding transport protein smoK.
       0.451
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.