Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_2083ATP-binding transport protein smoK. (353 aa)    
Predicted Functional Partners:
yurN
Probable sugar ABC transporter, permease protein.
 
  0.977
EIO_2080
ABC transporter, membrane spanning protein (sugar).
 
  0.975
EIO_2484
Binding-protein-dependent transport systems inner membrane component.
 
  0.973
EIO_0516
Sugar ABC transporter, permease protein, ThuG.
 
  0.971
EIO_0515
Sugar-binding transport system permease protein.
 
  0.969
EIO_2081
Binding-protein-dependent transport systems inner membrane component.
 
  0.968
EIO_1933
Binding-protein-dependent transport systems inner membrane component.
 
  0.959
EIO_2079
ABC transporter, substrate binding protein (sugar).
 
  0.959
EIO_1931
Extracellular solute-binding protein family 1.
  
  0.955
EIO_1932
tRNA-dihydrouridine synthase A.
  
  0.955
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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