STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmECytochrome c-type biogenesis protein CcmE. (151 aa)    
Predicted Functional Partners:
ccmC
Heme exporter protein CcmC.
 
 0.997
EIO_2101
Cytochrome c-type biogenesis protein CcmF.
 
 0.984
ccmB
Heme exporter protein CcmB.
 
 0.955
cycL
Cytochrome c biogenesis family protein.
 
  
 0.929
EIO_1376
Probable thiol-disulfide interchange protein.
 
  
 0.917
argC
N-acetyl-gamma-glutamyl-phosphate reductase.
     
 0.892
ccmA
ABC heme exporter, ATPase subunt CcmA.
 
 0.874
EIO_2105
Glutamate racemase.
       0.702
cycH
Cytochrome c-type biogenesis protein CycH.
 
  
 0.671
EIO_1616
Putative cytochrome c-type biogenesis protein CcdA.
     
 0.562
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.