Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccmECytochrome c-type biogenesis protein CcmE. (151 aa)    
Predicted Functional Partners:
ccmC
Heme exporter protein CcmC.
 
 0.998
ccmB
Heme exporter protein CcmB.
 
 0.995
EIO_2101
Cytochrome c-type biogenesis protein CcmF.
 
 0.992
ccmA
ABC heme exporter, ATPase subunt CcmA.
 
 0.986
EIO_1376
Probable thiol-disulfide interchange protein.
 
  
 0.922
cycL
Cytochrome c biogenesis family protein.
 
  
 0.921
argC
N-acetyl-gamma-glutamyl-phosphate reductase.
     
 0.868
EIO_0052
Putative ferric cations import ATP-binding protein fbpC.
     
  0.737
EIO_0053
Inner membrane protein ybbM.
     
  0.737
EIO_0349
Cysteine ABC transporter permease/ATP-binding protein.
     
  0.737
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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