STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2124Ribosomal large subunit pseudouridine synthase B. (649 aa)    
Predicted Functional Partners:
EIO_1016
Cytidylate kinase.
  
 0.840
EIO_2125
Conserved hypothetical protein.
     
 0.820
EIO_2126
Tellurite resistance protein.
     
 0.778
infB
Translation initiation factor IF-2.
     0.775
xth
Exodeoxyribonuclease III.
  
    0.767
EIO_2821
Exodeoxyribonuclease III, putative.
  
    0.767
EIO_2258
Putative transcriptional regulator.
  
  
 0.725
EIO_2123
Cytidine and deoxycytidylate deaminase family protein.
     
 0.717
EIO_0492
Methyltransferase, putative.
     0.651
rhlE
Putative ATP-dependent RNA helicase RhlE.
   0.627
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.