Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2124Ribosomal large subunit pseudouridine synthase B. (649 aa)    
Predicted Functional Partners:
EIO_1016
Cytidylate kinase.
 
  
 0.878
EIO_2125
Conserved hypothetical protein.
     
 0.816
xth
Exodeoxyribonuclease III.
  
    0.809
EIO_2821
Exodeoxyribonuclease III, putative.
  
    0.809
infB
Translation initiation factor IF-2.
    0.769
EIO_2126
Tellurite resistance protein.
     
 0.758
EIO_2258
Putative transcriptional regulator.
  
  
 0.741
EIO_2123
Cytidine and deoxycytidylate deaminase family protein.
       0.711
EIO_0492
Methyltransferase, putative.
     0.643
EIO_0206
50S ribosomal protein L20.
  
   0.589
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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