Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2134Probable cell cycle protein. (407 aa)    
Predicted Functional Partners:
EIO_2135
Tetratricopeptide TPR_2 repeat protein.
       0.854
EIO_2136
OmpA/MotB family protein.
   
   0.830
EIO_1465
Putative aminotransferase.
    
 0.807
ftsH
ATP-dependent metalloprotease FtsH.
   
 0.748
tolB
Translocation protein TolB precursor.
 
   
 0.746
EIO_0729
peptidyl-tRNA hydrolase.
 
  
 0.731
EIO_0560
Molybdopterin converting factor, subunit 2.
    
 0.716
EIO_1552
Conserved hypothetical protein.
    
 0.713
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit.
    
  0.705
EIO_1648
Cytochrome P450 family protein.
   
 
  0.697
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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