Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2138Possible TolA protein. (406 aa)    
Predicted Functional Partners:
EIO_2139
ExbD/TolR family protein.
  
 
 0.920
EIO_2140
MotA/TolQ/ExbB proton channel.
  
 
 0.893
cirA
Colicin I receptor.
  
 
 0.788
tolB
Translocation protein TolB precursor.
  
 
 0.783
EIO_2135
Tetratricopeptide TPR_2 repeat protein.
 
   
 0.715
EIO_2142
Conserved hypothetical protein.
 
     0.708
EIO_2198
TonB system transport protein ExbD type-1.
  
 
 0.694
exbD
exbD, uptake of enterochelin; tonB-dependent uptake of B colicins.
  
 
 0.694
EIO_0843
Cytochrome c family protein.
  
     0.681
EIO_2141
Putative thioesterase.
  
  
 0.675
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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