Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2143Holliday junction DNA helicase RuvB. (340 aa)    
Predicted Functional Partners:
ruvA
Holliday junction DNA helicase motor protein.
 
 0.999
ruvC
Crossover junction endodeoxyribonuclease RuvC.
 
 0.997
uvrA
Excinuclease ABC subunit A.
 
 
 0.908
mfd
Transcription-repair coupling factor.
 
  
 0.906
uvrC
Excinuclease ABC, C subunit.
  
 
 0.897
EIO_1120
Excinuclease ABC subunit B.
    
 0.881
EIO_1078
Phage integrase family protein.
 
 
 0.857
EIO_2141
Putative thioesterase.
     
 0.856
EIO_2142
Conserved hypothetical protein.
       0.854
xerC
Site-specific tyrosine recombinase XerC.
 
 
 0.850
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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