Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2155Conserved hypothetical protein. (410 aa)    
Predicted Functional Partners:
EIO_1361
Possible peptidoglycan binding protein.
  
  
 0.779
EIO_1256
Conserved hypothetical protein.
  
    0.508
EIO_2156
Ser/Thr protein phosphatase/nucleotidase, putative.
       0.504
tatC
Twin-arginine translocation protein TatC.
 
     0.469
otsA
Alpha,alpha-trehalose-phosphate synthase.
  
    0.450
EIO_0820
S4 domain protein.
 
 
 0.442
EIO_2751
Methyltransferase GidB.
   
 
 0.439
EIO_0336
Outer membrane efflux protein.
    
   0.436
EIO_1313
Nodulation protein T.
    
   0.436
EIO_0793
Peptide methionine sulfoxide reductase.
  
    0.428
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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