STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2161Transcriptional regulator, putative. (125 aa)    
Predicted Functional Partners:
EIO_2159
Conserved hypothetical protein.
 
    0.751
EIO_2160
Phenylacetic acid degradation-related protein.
  
    0.708
dnaX
DNA polymerase III, subunits gamma and tau.
 
 
  0.702
EIO_2162
Transcriptional regulator, MerR family.
 
    
0.682
EIO_2816
Conserved hypothetical protein.
    
  0.609
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.450
rpoB
DNA-directed RNA polymerase, beta subunit.
    
 
 0.401
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.