Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2165Uracil phosphoribosyltransferase. (214 aa)    
Predicted Functional Partners:
deoA
Thymidine phosphorylase.
    
 0.972
EIO_1089
UMP kinase.
   
 
 0.955
pyrF
Orotidine 5'-phosphate decarboxylase.
  
 
 0.938
EIO_1193
5'-nucleotidase surE.
  
  
 0.927
EIO_1670
Aminohydrolase protein.
  
 
 0.924
EIO_2064
Cytosine deaminase.
  
 
 0.924
mazG
MazG family protein.
    
 0.906
EIO_1414
Indigoidine synthase A like protein.
    
  0.906
EIO_2156
Ser/Thr protein phosphatase/nucleotidase, putative.
     
 0.905
EIO_1827
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase.
     
  0.900
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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