Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_2169Cytidine deaminase. (130 aa)    
Predicted Functional Partners:
deoA
Thymidine phosphorylase.
 
 0.999
EIO_2167
Phosphopentomutase.
 
   
 0.922
EIO_2156
Ser/Thr protein phosphatase/nucleotidase, putative.
 
  
  0.916
EIO_0842
Thymidine kinase.
    
 0.914
EIO_1135
2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein.
    
  0.902
cdd
Cytidine deaminase.
     
  0.900
EIO_1193
5'-nucleotidase surE.
     
 0.900
EIO_2774
Metal dependent phosphohydrolase.
     
  0.900
EIO_0857
Purine nucleoside phosphorylase.
 
  0.768
EIO_2165
Uracil phosphoribosyltransferase.
     
 0.677
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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