STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argDAcetylornithine/succinyldiaminopimelate aminotransferase. (415 aa)    
Predicted Functional Partners:
argF
Ornithine carbamoyltransferase.
  
 0.996
argJ
Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein.
 
 
 0.995
argC
N-acetyl-gamma-glutamyl-phosphate reductase.
 
 
 0.992
EIO_2786
Aminotransferase, classes I and II.
  
 
 0.941
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase.
    
 0.929
dapE
Succinyl-diaminopimelate desuccinylase.
  
 
 0.923
argG
Argininosuccinate synthase.
 
 
 0.921
EIO_1948
M20 family peptidase PepV.
  
 
 0.919
EIO_0595
Argininosuccinate lyase.
 
  
 0.859
asaL
Argininosuccinate lyase 2.
 
  
 0.843
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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