Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_2197ExbB family protein. (291 aa)    
Predicted Functional Partners:
EIO_2198
TonB system transport protein ExbD type-1.
 
 
 0.985
exbD
exbD, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.938
EIO_2139
ExbD/TolR family protein.
 
 
 0.926
EIO_2199
C-terminal TonB protein.
 
 
 0.884
EIO_2340
Energy transducer TonB.
 
 
 0.691
EIO_2136
OmpA/MotB family protein.
 
   
 0.651
tolB
Translocation protein TolB precursor.
 
  
 0.595
EIO_2138
Possible TolA protein.
  
 
 0.589
EIO_1561
acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine O-acyltransferase.
  
  
 0.418
EIO_2195
Hypothetical protein.
       0.407
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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