Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2198TonB system transport protein ExbD type-1. (111 aa)    
Predicted Functional Partners:
EIO_2197
ExbB family protein.
 
 
 0.985
exbB
tonB-system energizer ExbB.
 
 
 0.937
EIO_2140
MotA/TolQ/ExbB proton channel.
 
 
 0.915
EIO_2199
C-terminal TonB protein.
 
 
 0.898
EIO_2340
Energy transducer TonB.
 
 
 0.720
EIO_2138
Possible TolA protein.
  
 
 0.694
tolB
Translocation protein TolB precursor.
 
  
 0.686
rpoZ
DNA-directed RNA polymerase omega subunit.
  
     0.522
EIO_2136
OmpA/MotB family protein.
 
 
 
 0.494
EIO_0383
Tetratricopeptide TPR_2 repeat protein.
 
    0.470
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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