STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hasRHeme receptor. (1183 aa)    
Predicted Functional Partners:
pigE
Transmembrane sensor.
 
  
 0.916
EIO_2340
Energy transducer TonB.
 
 
 0.847
EIO_2199
C-terminal TonB protein.
 
 
 0.773
fecI
FecI-like protein.
  
  
 0.716
EIO_2495
Putative capsule polysaccharide exporter.
     
 0.695
EIO_2202
ECF family RNA polymerase sigma factor.
 
  
 0.672
EIO_1267
TonB-dependent receptor.
  
     0.668
EIO_0288
Sulfite reductase.
 
  
 0.593
EIO_1614
Hypothetical protein.
    
 
 0.561
EIO_2138
Possible TolA protein.
  
 
 0.556
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.