Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2210Elongation factor P. (400 aa)    
Predicted Functional Partners:
glyA
Serine hydroxymethyltransferase.
  
 0.942
EIO_2866
Phosphoserine phosphatase SerB.
   
 0.928
EIO_1625
Glycine cleavage system T protein.
  
 
 0.923
EIO_1627
Glycine dehydrogenase.
  
 
 0.919
EIO_0732
Tryptophan synthase, alpha subunit.
   
 
 0.917
EIO_1737
Malate synthase G.
  
 
 0.915
EIO_0101
Threonine dehydratase.
  
 
 0.914
EIO_0935
Threonine aldolase, low-specificity.
    
 0.914
EIO_2737
Threonine dehydratase.
  
 
 0.914
EIO_1626
Glycine cleavage system H protein.
  
 
 0.912
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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