Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2212Protein tyrosine/serine phosphatase. (205 aa)    
Predicted Functional Partners:
EIO_2269
NADH dehydrogenase subunit M.
    
 
 0.835
EIO_1880
Sulphate transporter.
   
   0.805
EIO_2826
Conserved hypothetical protein.
  
     0.765
EIO_2284
NADH-quinone oxidoreductase, B subunit.
    
   0.621
EIO_2813
Lipoprotein yjbH.
 
     0.593
EIO_2210
Elongation factor P.
  
    0.556
EIO_0417
Conserved hypothetical protein.
  
     0.547
nuoD
NADH dehydrogenase I, D subunit.
    
   0.547
EIO_2211
Hypothetical protein.
       0.536
EIO_2268
NADH dehydrogenase subunit N.
    
   0.532
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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