Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2214Aminomethyl transferase family protein. (246 aa)    
Predicted Functional Partners:
EIO_0200
Iron-sulfur cluster assembly family protein.
 
 0.860
EIO_1405
HesB/YadR/YfhF.
 
 0.859
EIO_0864
NifU domain protein.
   
 
 0.685
EIO_1465
Putative aminotransferase.
   
 
 0.670
EIO_1552
Conserved hypothetical protein.
     
 0.665
EIO_0828
Ferredoxin.
   
 
 0.654
EIO_2432
Glutamate synthase.
     
 0.647
EIO_1697
Cytochrome oxidase assembly protein.
    
  0.630
hisI
phosphoribosyl-AMP cyclohydrolase.
      0.626
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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