Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2215Inositol monophosphatase. (283 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit.
   
 
 0.593
nusG
Transcription termination/antitermination factor NusG.
   
 
 0.586
nusA
Transcription elongation factor NusA.
   
   0.580
rpoZ
DNA-directed RNA polymerase omega subunit.
   
   0.544
rpoB
DNA-directed RNA polymerase, beta subunit.
    
   0.534
efp
Elongation factor P.
  
    0.518
EIO_2701
3'-phosphadenosine 5'-phosphosulfate 3'-phosphatase.
 
   
 0.451
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.432
nusB
Putative N utilization substance protein B.
   
 
 0.426
EIO_1301
tRNA-dihydrouridine synthase, putative.
  
    0.407
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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