Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2220MotA/TolQ/ExbB proton channel family protein. (386 aa)    
Predicted Functional Partners:
EIO_2221
Flagellar motor protein.
 
     0.963
EIO_2616
DNA topoisomerase IV subunit A.
  
 
 0.778
EIO_2222
glutathione-S-transferase.
       0.773
EIO_2225
Heat shock protein DnaJ-like protein.
 
     0.705
EIO_2218
Conserved hypothetical protein.
       0.697
EIO_1546
DNA gyrase, A subunit.
   
 
 0.696
EIO_1547
DNA gyrase subunit A.
   
 
 0.696
acpP
Acyl carrier protein.
   
   0.689
EIO_2028
Hypothetical protein.
   
   0.689
acpA
Acyl carrier protein.
   
   0.689
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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