Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2224Conserved hypothetical protein. (203 aa)    
Predicted Functional Partners:
parE
DNA topoisomerase IV, B subunit.
  
   0.790
EIO_2225
Heat shock protein DnaJ-like protein.
       0.733
rpsC
30S ribosomal protein S3.
   
  0.635
rpsQ
Ribosomal protein S17.
   
  0.633
rpsN
Ribosomal protein S14.
   
  0.613
EIO_2600
30S ribosomal protein S12.
   
 0.605
rpsE
30S ribosomal protein S5.
   
  0.601
EIO_2595
30S ribosomal protein S10.
   
  0.601
rpsM
Ribosomal protein S13p/S18e.
   
  0.599
rplD
50S ribosomal protein L4.
   
  0.596
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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