Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2237Conserved hypothetical protein. (199 aa)    
Predicted Functional Partners:
EIO_2236
Ser/Thr protein phosphatase family protein.
     0.992
EIO_1193
5'-nucleotidase surE.
    
  0.903
EIO_1135
2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein.
    
  0.900
EIO_2238
5-formyltetrahydrofolate cyclo-ligase.
       0.714
EIO_2239
Magnesium transporter.
       0.677
EIO_2235
Conserved hypothetical protein.
       0.579
EIO_2240
Guanine deaminase.
       0.462
folD
Bifunctional protein FolD 2.
     0.459
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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