Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_22385-formyltetrahydrofolate cyclo-ligase. (187 aa)    
Predicted Functional Partners:
EIO_1282
Phosphoribosylglycinamide formyltransferase.
  
 
 0.926
EIO_2070
Methylenetetrahydrofolate dehydrogenase (NADP(+)).
    
 0.911
EIO_2073
FolD bifunctional protein.
    
 0.911
folD
Bifunctional protein FolD 2.
    
 0.911
EIO_2239
Magnesium transporter.
       0.854
EIO_2236
Ser/Thr protein phosphatase family protein.
       0.714
EIO_2237
Conserved hypothetical protein.
       0.714
pheT
phenylalanyl-tRNA synthetase, beta subunit.
 
  
 0.671
EIO_0854
Rhomboid family protein.
  
  
 0.662
EIO_2235
Conserved hypothetical protein.
       0.573
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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