Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2239Magnesium transporter. (460 aa)    
Predicted Functional Partners:
EIO_2238
5-formyltetrahydrofolate cyclo-ligase.
       0.854
EIO_2236
Ser/Thr protein phosphatase family protein.
       0.677
EIO_2237
Conserved hypothetical protein.
       0.677
EIO_2240
Guanine deaminase.
       0.547
EIO_2235
Conserved hypothetical protein.
       0.506
guaA
GMP synthase.
  
  
 0.490
recR
Recombination protein RecR.
     
 0.449
argF
Ornithine carbamoyltransferase.
     
 0.444
EIO_0510
Putative soluble lytic transglycosylase.
     
 0.432
EIO_1299
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
       0.416
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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