Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2240Guanine deaminase. (434 aa)    
Predicted Functional Partners:
xdhB
Xanthine dehydrogenase, B subunit.
 
 
 0.958
xdhA
Xanthine dehydrogenase, A subunit.
 
 
  0.949
guaD
Guanine deaminase.
  
  
 
0.923
EIO_0857
Purine nucleoside phosphorylase.
  
 
 0.904
EIO_1701
Hypoxanthine phosphoribosyltransferase.
    
  0.902
EIO_0955
Conserved hypothetical protein.
     
  0.900
gpt
Xanthine phosphoribosyltransferase.
     
  0.900
EIO_0977
Hydroxyisourate hydrolase.
 
   
 0.664
xdhC
Xanthine dehydrogenase accessory protein XdhC.
 
    0.643
EIO_0976
Urate catabolism protein.
 
     0.642
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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