Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glnB-1Nitrogen regulatory protein P-II. (112 aa)    
Predicted Functional Partners:
EIO_0502
Probable ammonium transporter, marine subtype.
 
 0.998
ntrB
Nitrogen regulation protein NtrB.
  
 0.977
EIO_0501
Nitrogen regulatory protein P-II.
  
  
 
0.902
EIO_0818
Tetratricopeptide TPR_2 repeat protein.
    
 
 0.761
EIO_2253
Glutamine synthetase class-I.
  
 
 0.730
EIO_2430
Glutamine-pyruvate aminotransferase.
  
  
 0.670
nadE
Glutamine-dependent NAD(+) synthetase.
     
 0.537
EIO_0517
ADP-ribosylation/Crystallin J1.
   
 
 0.496
EIO_1627
Glycine dehydrogenase.
      
 0.450
guaA
GMP synthase.
  
  
 0.439
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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