Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_2256Lipid A biosynthesis lauroyl acyltransferase, putative. (300 aa)    
Predicted Functional Partners:
EIO_1730
RNA polymerase sigma factor.
 
  
 0.965
EIO_2809
three-deoxy-D-manno-octulosonic-acid transferase-like protein.
    
 0.914
lpxK
Tetraacyldisaccharide 4'-kinase.
 
  
 0.871
EIO_1559
lipid-A-disaccharide synthase.
 
   
 0.860
EIO_1561
acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine O-acyltransferase.
 
   
 0.836
EIO_0382
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase.
 
   
 0.826
EIO_1075
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase.
 
   
 0.825
EIO_1858
KpsF/GutQ family protein.
 
   
 0.795
EIO_1678
Putative permease, YjgP/YjgQ family.
 
  
 0.763
EIO_1560
Conserved hypothetical protein.
 
     0.736
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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