Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2261Beta-hexosamidase. (107 aa)    
Predicted Functional Partners:
EIO_2260
Beta-hexosamidase.
 
     0.851
EIO_2262
Sporulation and cell division repeat protein.
       0.789
EIO_2259
Segregation and condensation protein A.
 
    0.784
EIO_2258
Putative transcriptional regulator.
  
    0.679
EIO_2041
Conserved hypothetical protein.
  
     0.670
EIO_0592
Conserved hypothetical protein.
 
  
 0.584
EIO_2263
arginyl-tRNA synthetase.
  
    0.582
rumA
23S rRNA (Uracil-5-)-methyltransferase rumA.
 
     0.495
EIO_1545
Disulfide bond formation protein DsbB.
  
     0.445
EIO_0188
Conserved hypothetical protein.
 
     0.434
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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