Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rhlEPutative ATP-dependent RNA helicase RhlE. (517 aa)    
Predicted Functional Partners:
EIO_2848
Polyribonucleotide nucleotidyltransferase.
  
 0.969
rplD
50S ribosomal protein L4.
   
 0.944
rplJ
50S ribosomal protein L10.
   
 0.939
EIO_1716
Ribosomal RNA large subunit methyltransferase J.
   
 0.929
rpmD
Ribosomal protein L30.
   
 0.929
EIO_2598
Elongation factor G.
   
 0.929
rplW
Ribosomal protein L23.
   
 0.928
EIO_2182
Ornithine carbamoyltransferase.
  
 0.912
rplV
Ribosomal protein L22.
   
 0.904
rpsC
30S ribosomal protein S3.
   
 0.863
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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